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FOR
IMMEDIATE RELEASE
July
10, 2007.
Scientists
Establish Essential Markers to Characterise Human Embryonic Stem
Cell Lines.
Applied
Biosystems technology enables discovery and validation of gene expression
markers; company develops new standardised TaqMan® Array for
stem cell research
SHEFFIELD,
U.K., and FOSTER CITY, Calif. – July 10, 2007 – Scientists with
the International Stem Cell Initiative (ISCI) have identified a
set of common gene expression markers that may be used to reliably
characterise diverse human embryonic stem cell (hESC) lines. The
initiative represents the first internationally coordinated effort
to provide a systematic and comparative survey of the hESC lines
available from various research groups around the world. The results
of the groundbreaking study were published today in the July issue
of Nature Biotechnology.
Stem
cells offer great potential to develop new therapies for cancer,
diabetes, spinal cord injury, and degenerative diseases of the nervous
system, such as Parkinson’s disease. Well-characterised, stable
cell lines that can be predictably reproduced are essential for
successful stem cell research, yet scientists previously have not
had a reliable means to understand similarities and differences
among the cell lines available for study.
To
address this challenge, the ISCI employed technology from Applied
Biosystems, (NYSE: ABI), an Applera Corporation business and a global
leader in the development and commercialisation of instrument-based
systems, consumables, software, and services for the life science
market, to carry out the first comparative study of a large and
diverse collection of hESC lines from 17 laboratories in the U.S.,
Europe, Israel, Japan, and Australia. The team used several approaches
to identify a reliable set of genetic markers to characterize hESCs,
which included profiling 93 genes in 59 different cell lines.
A
major finding from this first phase of the ICSI project was that
all of the cell lines studied shared a number of key molecular signatures,
despite different genetic constitutions and the various culture
techniques to which they have been subjected. It is expected that
these newly identified molecular markers may be used to validate
the potential of individual hESC lines to differentiate into other
types of cells, also referred to as their pluripotency status.
The
ISCI scientists used the Applied Biosystems 7900HT Fast Real-Time
PCR System and custom Applied Biosystems TaqMan® Arrays to identify
six key genetic markers and 14 additional genes highly correlated
with a key pluripotency marker in all the cell lines tested. Applied
Biosystems worked with the ISCI researchers at the centralised analytical
laboratory at the University of Sheffield in the U.K., to select
the assays, process the arrays and analyse the results.
“These
findings are a crucial first step in ensuring that future advances
in the field of stem cell research involve internationally coordinated
quality standards,” said Paul Gokhale, Ph.D, of the Centre for Stem
Cell Research at the University of Sheffield. “Our collective aim
is to provide openness, reliability, and the ability for scientists
to confidently reproduce and extend each other’s work.”
As
a result of this ISCI study, Applied Biosystems has developed the
TaqMan Array Human Stem Cell Pluripotency Panel, which targets 96
genes for independent monitoring of hESC lines to help investigators
compare cell lines derived from diverse sources. The company said
it has also created a TaqMan Array Mouse Stem Cell Pluripotency
Panel comprised of mouse orthologs to the genes on the human panel.
The new TaqMan arrays, along with a complete line of TaqMan low-density
array gene signature panels and more than 700,000 individual TaqMan
Gene Expression Assays are available on the Applied Biosystems website
(http://www.appliedbiosystems.com/).
“Stem
cells have shown enormous potential for improving human health,
and Applied Biosystems is fully committed to supporting our customers
in their research in this emerging field,” said Lars Holmkvist,
president of Applied Biosystems, Europe. “The results from the first
phase of the ISCI project should provide scientists with greater
confidence in the biological relevance of the data obtained from
research using these stem cell lines, and ultimately lead to better
disease treatment and progress in regenerative medicine.”
The
TaqMan Arrays used in this study are microfluidic cards that enable
parallel analysis of up to eight biological samples across 12 to
384 pre-loaded TaqMan Gene Expression Assays, without requiring
liquid-handling robots or multi-channel pipettes. To perform gene
expression analysis, researchers simply add cDNA to the TaqMan arrays.
The arrays were then analysed by the Applied Biosystems 7900HT Fast
Real-Time PCR System. Real-time PCR is a laboratory method that
measures changes in levels of DNA and RNA in samples.
The
next phase of the ISCI work will expand on the current findings
by adding additional hESCs to the study in order to further verify
the team’s initial results, as well as to test the effects of different
culture media on hESC growth and differentiation, and on genetic
changes in these cells. A comprehensive registry of the ISCI cell
lines and their molecular characteristics is now publicly available
at http://www.stemcellforum.org/
More
information about the Applied Biosystems TaqMan Arrays and Real-Time
PCR Systems is available at http://tlda.appliedbiosystems.com.
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